Infinite Shelters
Go to Guardia Forest in 600 AD. Once inside, take the first right, and go to the upper path. While in the small clearing, look for a bush in the upper left. Move next to the bush, and it will begin to shake. Press A, and a monster will pop out, leaving a Shelter as it runs away. Get the Shelter, then leave the forest, and reenter. Repeat this as many times as desired.

Infinite Strength Capsules
When on the Black Omen, you will encounter a Blubber Hulk (which at first looks like a tornado on the ground). Approach it, and have Ayla use Charm to get a Strength Capsule. Then, run away, and go back through the door you came through (with the two Nus), and repeat as many times as desired.

More money in New Game+
Money does not transfer into your next game in New Game+ mode. To keep your wealth, before facing Lavos at the end of Black Omen, buy everything possible from the merchants until your funds are exhausted. Visit the trader in the Prehistoric Era, and trade for as many of his items as possible. Then, defeat Lavos to successfully complete the game. In New Game + mode, your items will carry over. Sell all the unwanted items for money in New Game+ mode.

Completion bonuses
Defeat Lavos at the end of Black Omen, and successfully complete the game to unlock New Game+ mode and the Dimensional Vortex dungeon.

Lost Sanctum dungeon
Unlock the Black Omen in 12,000 B.C. The Lost Sanctum dungeon will now be accessible in 65 million B.C., and at certain locations in 600 A.D.

Getting Magus
The second time you fight Magus, you are given the choice of "Yes, I want to fight you" and "No, I don't". If you choose "No", not only will you not have to fight Magus, but he will also join your party.

Alternate endings
Successfully complete the indicated task to view the corresponding alternate ending:

Beyond Time: Defeat Lavos after reviving Crono at Death Peak.
Dino Age: Defeat Lavos after facing Magus, but before facing Azala.
Dream's Epilogue: Defeat the Dream Devourer beyond Time's Eclipse.
Good Night: Defeat Lavos after visiting the End of Time, but before returning to the Middle Ages.
Memory Lane: Defeat Lavos after Schala opens the sealed door, but before restoring the light to the pendant.
People Of The Times: Defeat Lavos after regaining the gate key, but before giving the Masamune to Frog.
Reunion: Defeat Lavos while Crono is dead.
The Dream Project: Defeat Lavos in the Ocean Palace. Also available after starting New Game+ mode.
The Legendary Hero: Defeat Lavos after arriving in the Middle Ages, but before obtaining the Hero's Badge.
The Oath: Defeat Lavos after giving the Masamune to Frog but before fighting Magus.
The Successor Of Guardia: Defeat Lavos after saving Leene and Marle, but before visiting the End of Time.
The Unknown Past: Defeat Lavos after obtaining the Hero's Badge, but before the Gate Key is stolen.
What The Prophet Seeks: Defeat Lavos after facing Azala, but before Schala opens the sealed door.

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